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T-cell Epitopes
Mutated Antigens
Shared Tumor-specific Antigens
Differentiation Antigens
Overexpressed Antigens
Potential Antigens

Peptide Database

Updated: October 23, 2007

Table 1. Tumor antigens resulting from mutations

Gene/protein

Tumor

HLAa

HLA
Frequencyb
(%)

Peptidec

Position

Lymphocyte Stimulation Method

References

alpha-actinin-4

lung carcinoma

A2

44

FIASNGVKLV

118-127

autologous tumor cells

Echchakir, 2001

ARTC1

melanoma

DR1

18

YSVYFNLPADTIYTNh

 

autologous tumor cells

Wang, 2005

BCR-ABL fusion protein (b3a2)

chronic myeloid leukemia

A2

44

SSKALQRPV

926-934

peptide

Yotnda, 1998a

B8

14

GFKQSSKAL

922-930

peptide

Yotnda, 1998a

DR4

24

ATGFKQSSKALQRPVAS

920-936

peptide

ten Bosch, 1996

DR9

3

ATGFKQSSKALQRPVAS

920-936

peptide

Makita, 2002

B-RAF

melanoma

DR4

24

EDLTVKIGDFGLATEKSRWSGSHQFEQLS

586-614

peptide

Sharkey, 2004

CASP-5

colorectal, gastric, and endometrial carcinoma

A2

44

FLIIWQNTMg

67-75

peptide

Schwitalle, 2004

CASP-8

head and neck squamous cell carcinoma

B35

20

FPSDSWCYF

476-484

autologous tumor cells

Mandruzzato, 1997

beta-catenin

melanoma

A24

20

SYLDSGIHF

29-37

autologous tumor cells

Robbins, 1996

Cdc27

melanoma

DR4

24

FSWAMDLDPKGAe

760-771

autologous tumor cells

Wang, 1999b

CDK4

melanoma

A2

44

ACDPHSGHFV

23-32

autologous tumor cells

Wolfel, 1995

CDKN2A

melanoma

A11

13

AVCPWTWLRg

125-133 (p14ARF-ORF3)
111-119 (p16INK4a-ORF3)

autologous tumor cells

Huang, 2004

COA-1

colorectal carcinoma

DR4

24

TLYQDDTLTLQAAGe

371-384

autologous tumor cells

Maccalli, 2003

DR13

19

TLYQDDTLTLQAAGe

371-384

autologous tumor cells

Maccalli, 2003

dek-can fusion protein

myeloid leukemia

DR53

49

TMKQICKKEIRRLHQY

342-357

peptide

Makita, 2002

EFTUD2

melanoma

A3

22

KILDAVVAQK

668-677

autologous tumor cells

Lennerz, 2005

Elongation factor 2

lung squamous CC

A68

8

ETVSEQSNV

581-589

autologous tumor cells

Hogan, 1998

ETV6-AML1 fusion protein

acute lymphoblastic leukemia

A2

44

RIAECILGM

334-342

peptide

Yotnda, 1998b

DP5

3

IGRIAECILGMNPSR

332-346

peptide

Yun, 1999

DP17

1

IGRIAECILGMNPSR

332-346

peptide

Yun, 1999

FLT3-ITDNew

acute myelogenous leukemia

A1

26

YVDFREYEYY

591-600

peptide

Graf, 2007

FN1

melanoma

DR2

25

MIFEKHGFRRTTPP

2050-2063

autologous tumor cells

Wang, 2002

GPNMB

melanoma

A3

22

TLDWLLQTPK

179-188

autologous tumor cells

Lennerz, 2005

LDLR-fucosyltransferaseAS fusion protein

melanoma

DR1

18

WRRAPAPGA

315-323

autologous tumor cells

Wang, 1999a

DR1

18

PVTWRRAPA

312-320

autologous tumor cells

Wang, 1999a

HLA-A2d

renal cell carcinoma

 

 

 

 

autologous tumor cells

Brandle, 1996

HLA-A11d

melanoma

 

 

 

 

autologous tumor cells

Huang, 2004

hsp70-2

renal cell carcinoma

A2

44

SLFEGIDIYT

286-295

autologous tumor cells

Gaudin, 1999

KIAAO205

bladder tumor

B44

21

AEPINIQTW

262-270

autologous tumor cells

Gueguen, 1998

MART2

melanoma

A1

26

FLEGNEVGKTY

446-455

autologous tumor cells

Kawakami, 2001

ME1

non-small cell lung carcinoma

A2

44

FLDEFMEGV

224-232

autologous tumor cells

Karanikas, 2001

MUM-1f

melanoma

B44

21

EEKLIVVLF

30-38

autologous tumor cells

Coulie, 1995

MUM-2

melanoma

B44

21

SELFRSGLDSY

123-133

autologous tumor cells

Chiari, 1999

Cw6

18

FRSGLDSYV

126-134

autologous tumor cells

Chiari, 1999

MUM-3

melanoma

A68

8

EAFIQPITR

322-330

autologous tumor cells

Baurain, 2000

neo-PAP

melanoma

DR7

25

RVIKNSIRLTLe

724-734

autologous tumor cells

Topalian, 2002

Myosin class I

melanoma

A3

22

KINKNPKYK

911-919

expansion of TIL with IL-2

Zorn, 1999

NFYC

lung squamous cell carcinoma

B52

5

QQITKTEV

275-282

autologous tumor cells

Takenoyama, 2006

OGT

colorectal carcinoma

A2

44

SLYKFSPFPLg

28-37

peptide

Ripberger, 2003

OS-9

melanoma

B44

21

KELEGILLL

438-446

autologous tumor cells

Vigneron, 2002

p53New

head and neck squamous cell carcinoma

A2

44

VVPCEPPEV

217-225

peptide

Ito, 2007

pml-RARalpha fusion protein

promyelocytic leukemia

DR11

25

NSNHVASGAGEAAIETQSSSSEEIV

 

peptide

Gambacorti, 1993

PRDX5

melanoma

A2

44

LLLDDLLVSI

163-172

peptide

Sensi, 2005

PTPRK

melanoma

DR10

3

PYYFAAELPPRNLPEP

667-682

autologous tumor cells

Novellino, 2003

K-ras

pancreatic adenocarcinoma

B35

20

VVVGAVGVG

7-15

peptide

Gjertsen, 1997

N-ras

melanoma

A1

26

ILDTAGREEY

55-64

autologous tumor cells

Linard, 2002

RBAF600

melanoma

B7

17

RPHVPESAF

329-337

autologous tumor cells

Lennerz, 2005

SIRT2

melanoma

A3

22

KIFSEVTLK

192-200

autologous tumor cells

Lennerz, 2005

SNRPD1

melanoma

B38

5

SHETVIIEL

11-19

autologous tumor cells

Lennerz, 2005

SYT-SSX1 or -SSX2 fusion protein

sarcoma

B7

17

QRPYGYDQIM

402-410 (SYT)
111-112 (SSX2)

peptide

Worley, 2001

Triosephosphate Isomerase

melanoma

DR1

18

GELIGILNAAKVPAD

23-37

autologous tumor cells

Pieper, 1999

aClass II HLA are indicated in blue.
bFrequency in Caucasians, based on (1) Marsh SGE, Parham P, Barber LD. The HLA Factsbook (Academic Press, 2000) for HLA-A, B, C, and DR, and (2) Colombani J. HLA, Fonctions immunitaires et applications médicales (John Libbey Eurotext, 1993) for HLA-DP and DR.
cThe residues modified by the mutation are indicated in red.
dThe mutation affects the HLA gene itself.
eThe mutation is not located in the region encoding the peptide.
fLink to GenBank.
gFrameshift product.
hThe mutation creates a start codon (ATG) that opens an alternative ORF encoding the antigenic peptide. This peptide is recognized by regulatory T cells (Tregs).

 

References

Baurain J-F, Colau D, van Baren N, Landry C, Martelange V, Vikkula M, Boon T, Coulie PG. High frequency of autologous anti-melanoma CTLs directed against an antigen generated by a point mutation in a new helicase gene. J Immunol 2000; 164: 6057-66. (PMID: 10820291)

Brandle D, Brasseur F, Weynants P, Boon T, Van den Eynde B. A mutated HLA-A2 molecule recognized by autologous cytotoxic T lymphocytes on a human renal cell carcinoma. J Exp Med 1996; 183: 2501-2508. (PMID: 8676070)

Chiari R, Foury F, De Plaen E, Baurain JF, Thonnard J, Coulie PG. Two antigens recognized by autologous CTL on a melanoma result from a single point mutation in an essential housekeeping gene. Cancer Res 1999; 59: 5785-5792. (PMID: 10582700)

Coulie PG, Lehmann F, Lethe B, Herman J, Lurquin C, Andrawiss M, Boon T. A mutated intron sequence codes for an antigenic peptide recognized by cytolytic T lymphocytes on a human melanoma. Proc Natl Acad Sci USA 1995; 92: 7976-7980. (PMID: 7644523)

Echchakir H, Mami-Chouaib F, Vergnon I, Baurain JF, Karanikas V, Chouaib S, Coulie PG. A point mutation in the alpha-actinin-4 gene generates an antigenic peptide recognized by autologous cytolytic T lymphocytes on a human lung carcinoma. Cancer Res 2001; 61: 4078-83. (PMID: 11358829)

Gambacorti-Passerini C, Grignani F, Arienti F, Pandolfi PP, Pelicci PG, Parmiani G. Human CD4 lymphocytes specifically recognize a peptide representing the fusion region of the hybrid protein pml/RAR alpha present in acute promyelocytic leukemia cells. Blood 1993; 81: 1369-75. (PMID: 8095167)

Gaudin C, Kremer F, Angevin E, Scott V, Triebel F. A hsp70-2 mutation recognized by CTL on a human renal cell carcinoma. J Immunol 1999; 162: 1730-1738. (PMID: 9973436)

Gjertsen MK, Bjorheim J, Saeterdal I, Myklebust J, Gaudernack G. Cytotoxic CD4+ and CD8+ T lymphocytes, generated by mutant p21-ras (12Val) peptide vaccination of a patient, recognize 12Val-dependent nested epitopes present within the vaccine peptide and kill autologous tumour cells carrying this mutation. Int J Cancer 1997; 72: 784-790. (PMID: 9311595)

Graf C, Heidel F, Tenzer S, Radsak MP, Solem FK, Britten CM, Huber C, Fischer T, Wölfel T. A neoepitope generated by an FLT3 internal tandem duplication (FLT3-ITD) is recognized by leukemia-reactive autologous CD8+ T cells. Blood 2007; 109: 2985-8. (PMID: 17119119)New

Gueguen M, Patard JJ, Gaugler B, Brasseur F, Renauld JC, Van Cangh PJ, Boon T, Van den Eynde BJ. An antigen recognized by autologous CTL on a human bladder carcinoma. J Immunol 1998; 160: 6188-6194. (PMID: 9637538)

Hogan KT, Eisinger DP, Cupp SB, Lekstrom KJ, Deacon DD, Shabanowitz J, Hunt DF, Engelhard VH, Slingluff CL, Ross MM. The peptide recognized by HLA-A68.2-restricted, squamous cell carcinoma of the lung-specific cytotoxic T lymphocytes is derived from a mutated elongation factor 2 gene. Cancer Res 1998; 58: 5144-5150. (PMID: 9823325)

Huang J, El-Gamil M, Dudley ME, Li YF, Rosenberg SA, Robbins PF. T cells associated with tumor regression recognize frameshifted products of the CDKN2A tumor suppressor gene locus and a mutated HLA class I gene product. J Immunol 2004; 172: 6057-64. (PMID: 15128789)

Ito D, Visus C, Hoffmann TK, Balz V, Bier H, Appella E, Whiteside TL, Ferris RL, DeLeo AB. Immunological characterization of missense mutations occurring within cytotoxic T cell-defined p53 epitopes in HLA-A*0201+ squamous cell carcinomas of the head and neck. Int J Cancer 2007; 120: 2618-24. (PMID: 17294448)New

Karanikas V, Colau D, Baurain J-F, Chiari R, Thonnard J, Gutierrez-Roelens I, Goffinet C, Van Schaftingen E, Weynants P, Boon T, Coulie PG. High frequency of cytolytic T lymphocytes directed against a tumor-specific mutated antigen detectable with HLA tetramers in the blood of a lung carcinoma patient with long survival. Cancer Res 2001; 61: 3718-24. (PMID: 11325844)

Kawakami Y, Wang X, Shofuda T, Sumimoto H, Tupesis JP, Fitzgerald E, Rosenberg SA. Isolation of a new melanoma antigen, MART-2, containing a mutated epitope recognized by autologous tumor-infiltrating T lymphocytes. J Immunol 2001; 166: 2871-2877. (PMID: 11160356)

Lennerz V, Fatho M, Gentilini C, Frye RA, Lifke A, Ferel D, Wölfel C, Huber C, Wölfel T. The response of autologous T cells to a human melanoma is dominated by mutated neoantigens. Proc Natl Acad Sci U S A 2005; 102: 16013-8. (PMID: 16247014)

Linard B, Bezieau S, Benlalam H, Labarriere N, Guilloux Y, Diez E, Jotereau F. A ras-mutated peptide targeted by CTL infiltrating a human melanoma lesion. J Immunol 2002; 168: 4802-8 (PMID: 11971032)

Maccalli C, Li YF, El-Gamil M, Rosenberg SA, Robbins PF. Identification of a colorectal tumor-associated antigen (COA-1) recognized by CD4+ T lymphocytes. Cancer Res 2003; 63: 6735-43. (PMID: 14583468)

Makita M, Azuma T, Hamaguchi H, Niiya H, Kojima K, Fujita S, Tanimoto M, Harada M, Yasukawa M. Leukemia-associated fusion proteins, dek-can and bcr-abl, represent immunogenic HLA-DR-restricted epitopes recognized by fusion peptide-specific CD4+ T lymphocytes. Leukemia 2002; 16: 2400-7. (PMID: 12454745)

Mandruzzato S, Brasseur F, Andry G, Boon T, van der Bruggen P. A CASP-8 mutation recognized by cytolytic T lymphocytes on a human head and neck carcinoma. J Exp Med 1997; 186: 785-793. (PMID: 9271594)

Novellino L, Renkvist N, Rini F, Mazzocchi A, Rivoltini L, Greco A, Deho P, Squarcina P, Robbins PF, Parmiani G, Castelli C. Identification of a mutated receptor-like protein tyrosine phosphatase kappa as a novel, class II HLA-restricted melanoma antigen. J Immunol 2003; 170: 6363-70. (PMID: 12794170)

Pieper R, Christian RE, Gonzales MI, Nishimura MI, Gupta G, Settlage RE, Shabanowitz J, Rosenberg SA, Hunt DF, Topalian SL. Biochemical identification of a mutated human melanoma antigen recognized by CD4+ T cells. J Exp Med 1999; 189: 757-765. (PMID: 10049939)

Ripberger E, Linnebacher M, Schwitalle Y, Gebert J, von Knebel Doeberitz M. Identification of an HLA-A0201-restricted CTL epitope generated by a tumor-specific frameshift mutation in a coding microsatellite of the OGT gene. J Clin Immunol 2003; 23: 415-23. (PMID: 14601650)

Robbins PF, El-Gamil M, Li YF, Kawakami Y, Loftus D, Appella E, Rosenberg SA. A mutated beta-catenin gene encodes a melanoma-specific antigen recognized by tumor infiltrating lymphocytes. J Exp Med 1996; 183: 1185-1192. (PMID: 8642260)

Schwitalle Y, Linnebacher M, Ripberger E, Gebert J, von Knebel Doeberitz M. Immunogenic peptides generated by frameshift mutations in DNA mismatch repair-deficient cancer cells. Cancer Immun [serial online] 2004; 4: 14. URL: http://www.cancerimmunity.org/v4p14/041015.htm (PMID: 15563124)

Sensi M, Nicolini G, Zanon M, Colombo C, Molla A, Bersani I, Lupetti R, Parmiani G, Anichini A. Immunogenicity without immunoselection: a mutant but functional antioxidant enzyme retained in a human metastatic melanoma and targeted by CD8+ T cells with a memory phenotype. Cancer Res 2005; 65: 632-40. (PMID: 15695408)

Sharkey MS, Lizée G, Gonzales MI, Patel S, Topalian SL. CD4+ T-cell recognition of mutated B-RAF in melanoma patients harboring the V599E mutation. Cancer Res 2004; 64: 1595-9. (PMID: 14996715)

Takenoyama M, Baurain JF, Yasuda M, So T, Sugaya M, Hanagiri T, Sugio K, Yasumoto K, Boon T, Coulie PG. A point mutation in the NFYC gene generates an antigenic peptide recognized by autologous cytolytic T lymphocytes on a human squamous cell lung carcinoma. Int J Cancer 2006; 118: 1992-7. (PMID: 16287085)

ten Bosch GJ, Joosten AM, Kessler JH, Melief CJ, Leeksma OC. Recognition of BCR-ABL positive leukemic blasts by human CD4+ T cells elicited by primary in vitro immunization with a BCR-ABL breakpoint peptide. Blood 1996; 88: 3522-3527. (PMID: 8896419)

Topalian SL, Gonzales MI, Ward Y, Wang X, Wang RF. Revelation of a cryptic major histocompatibility complex class II-restricted tumor epitope in a novel RNA-processing enzyme. Cancer Res 2002; 62: 5505-9. (PMID: 12359760)

Vigneron N, Ooms A, Morel S, Degiovanni G, Van den Eynde B. Identification of a new peptide recognized by autologous cytolytic T lymphocytes on a human melanoma. Cancer Immun [serial online] 2002; 2: 9. URL: http://www.cancerimmunity.org/v2p9/020709.htm (PMID: 12747754)

Wang HY, Zhou J, Zhu K, Riker AI, Marincola FM, Wang R-F. Identification of a mutated fibronectin as a tumor antigen recognized by CD4+ T cells: its role in extracellular matrix formation and tumor metastasis. J Exp Med 2002; 195: 1397-406. (PMID: 12045238)

Wang HY, Peng G, Guo Z, Shevach EM, Wang RF. Recognition of a new ARTC1 peptide ligand uniquely expressed in tumor cells by antigen-specific CD4+ regulatory T cells. J Immunol 2005; 174: 2661-70. (PMID: 15728473)

Wang RF, Wang X, Rosenberg SA. Identification of a novel major histocompatibility complex class II-restricted tumor antigen resulting from a chromosomal rearrangement recognized by CD4+ T cells. J Exp Med 1999a; 189: 1659-1667. (PMID: 10330445)

Wang RF, Wang X, Atwood AC, Topalian SL, Rosenberg SA. Cloning genes encoding MHC class II-restricted antigens: mutated CDC27 as a tumor antigen. Science 1999b; 284: 1351-1354. (PMID: 10334988)

Wolfel T, Hauer M, Schneider J, Serrano M, Wolfel C, Klehmann-Hieb E, De Plaen E, Hankeln T, Meyer zum Buschenfelde KH, Beach D. A p16INK4a-insensitive CDK4 mutant targeted by cytolytic T lymphocytes in a human melanoma. Science 1995; 269: 1281-1284. (PMID: 7652577)

Worley BS, van den Broeke LT, Goletz TJ, Pendleton CD, Daschbach EM, Thomas EK, Marincola FM, Helman LJ, Berzofsky JA. Antigenicity of fusion proteins from sarcoma-associated chromosomal translocations. Cancer Res 2001; 61: 6868-75. (PMID: 11559563)

Yotnda P, Firat H, Garcia-Pons F, Garcia Z, Gourru G, Vernant JP, Lemonnier FA, Leblond V, Langlade-Demoyen P. Cytotoxic T cell response against the chimeric p210 BCR-ABL protein in patients with chronic myelogenous leukemia. J Clin Invest 1998a; 101: 2290-6. (PMID: 9593785)

Yotnda P, Garcia F, Peuchmaur M, Grandchamp B, Duval M, Lemonnier F, Vilmer E, Langlade-Demoyen P. Cytotoxic T cell response against the chimeric ETV6-AML1 protein in childhood acute lymphoblastic leukemia. J Clin Invest 1998b; 102: 455-62. (PMID: 9664088)

Yun C, Senju S, Fujita H, Tsuji Y, Irie A, Matsushita S, Nishimura Y. Augmentation of immune response by altered peptide ligands of the antigenic peptide in a human CD4+ T-cell clone reacting to TEL/AML1 fusion protein. Tissue Antigens 1999; 54: 153-61. (PMID: 10488742)

Zorn E, Hercend T. A natural cytotoxic T cell response in a spontaneously regressing human melanoma targets a neoantigen resulting from a somatic point mutation. Eur J Immunol 1999; 29: 592-601. (PMID: 10064075)

 

T-cell Epitopes
Mutated Antigens
Shared Tumor-specific Antigens
Differentiation Antigens
Overexpressed Antigens
Potential Antigens

Copyright © 2001 - 2007 by Pierre van der Bruggen et al.